That means the country, which has a population of 10.65 million, has recorded more new daily coronavirus cases than Germany, which has a population nearly eight times the size at 83.1 million.
The Czech Republic death toll now stands at 2,547, according to the ministry.
Despite new measures taken by the Czech government last week, the numbers of Covid-19 infections are growing. There are now 6,191 patients in hospital, 893 of them in a serious condition.
The government announced that students will not be returning to schools on Monday, November 2, as planned and that it will ask the Parliament to extend the state of emergency by one month, until December 3.